Standard
microbeMASST : a taxonomically informed mass spectrometry search tool for microbial metabolomics data. / Zuffa, Simone; Schmid, Robin; Bauermeister, Anelize; Paulo, Paulo Wender; Caraballo-Rodriguez, Andres M.; El Abiead, Yasin; Aron, Allegra T.; Gentry, Emily C.; Zemlin, Jasmine; Meehan, Michael J.; Avalon, Nicole E.; Cichewicz, Robert H.; Buzun, Ekaterina; Terrazas, Marvic Carrillo; Hsu, Chia Yun; Oles, Renee; Ayala, Adriana Vasquez; Zhao, Jiaqi; Chu, Hiutung; Kuijpers, Mirte C.M.; Jackrel, Sara L.; Tugizimana, Fidele; Nephali, Lerato Pertunia; Dubery, Ian A.; Madala, Ntakadzeni Edwin; Moreira, Eduarda Antunes; Costa-Lotufo, Leticia Veras; Lopes, Norberto Peporine; Rezende-Teixeira, Paula; Jimenez, Paula C.; Rimal, Bipin; Patterson, Andrew D.; Traxler, Matthew F.; Pessotti, Rita de Cassia; Alvarado-Villalobos, Daniel; Tamayo-Castillo, Giselle; Chaverri, Priscila; Escudero-Leyva, Efrain; Quiros-Guerrero, Luis Manuel; Bory, Alexandre Jean; Joubert, Juliette; Rutz, Adriano; Wolfender, Jean Luc; Allard, Pierre Marie; Sichert, Andreas; Pontrelli, Sammy; Pullman, Benjamin S.; Bandeira, Nuno; Gerwick, William H.; Gindro, Katia; Massana-Codina, Josep; Wagner, Berenike C.; Forchhammer, Karl; Petras, Daniel; Aiosa, Nicole; Garg, Neha; Liebeke, Manuel; Bourceau, Patric; Kang, Kyo Bin; Gadhavi, Henna; de Carvalho, Luiz Pedro Sorio; Silva dos Santos, Mariana; Pérez-Lorente, Alicia Isabel; Molina-Santiago, Carlos; Romero, Diego; Franke, Raimo; Brönstrup, Mark; Vera Ponce de León, Arturo; Pope, Phillip Byron; La Rosa, Sabina Leanti; La Barbera, Giorgia; Roager, Henrik M.; Laursen, Martin Frederik; Hammerle, Fabian; Siewert, Bianka; Peintner, Ursula; Licona-Cassani, Cuauhtemoc; Rodriguez-Orduña, Lorena; Rampler, Evelyn; Hildebrand, Felina; Koellensperger, Gunda; Schoeny, Harald; Hohenwallner, Katharina; Panzenboeck, Lisa; Gregor, Rachel; O’Neill, Ellis Charles; Roxborough, Eve Tallulah; Odoi, Jane; Bale, Nicole J.; Ding, Su; Sinninghe Damsté, Jaap S.; Guan, Xue Li; Cui, Jerry J.; Ju, Kou San; Silva, Denise Brentan; Silva, Fernanda Motta Ribeiro; da Silva, Gilvan Ferreira; Koolen, Hector H.F.; Grundmann, Carlismari; Clement, Jason A.; Mohimani, Hosein; Broders, Kirk; McPhail, Kerry L.; Ober-Singleton, Sidnee E.; Rath, Christopher M.; McDonald, Daniel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C.
I:
Nature Microbiology, Bind 9, Nr. 2, 2024, s. 336-345.
Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
Harvard
Zuffa, S, Schmid, R, Bauermeister, A, Paulo, PW, Caraballo-Rodriguez, AM, El Abiead, Y, Aron, AT, Gentry, EC, Zemlin, J, Meehan, MJ, Avalon, NE, Cichewicz, RH, Buzun, E, Terrazas, MC, Hsu, CY, Oles, R, Ayala, AV, Zhao, J, Chu, H, Kuijpers, MCM, Jackrel, SL, Tugizimana, F, Nephali, LP, Dubery, IA, Madala, NE, Moreira, EA, Costa-Lotufo, LV, Lopes, NP, Rezende-Teixeira, P, Jimenez, PC, Rimal, B, Patterson, AD, Traxler, MF, Pessotti, RDC, Alvarado-Villalobos, D, Tamayo-Castillo, G, Chaverri, P, Escudero-Leyva, E, Quiros-Guerrero, LM, Bory, AJ, Joubert, J, Rutz, A, Wolfender, JL, Allard, PM, Sichert, A, Pontrelli, S, Pullman, BS, Bandeira, N, Gerwick, WH, Gindro, K, Massana-Codina, J, Wagner, BC, Forchhammer, K, Petras, D, Aiosa, N, Garg, N, Liebeke, M, Bourceau, P, Kang, KB, Gadhavi, H, de Carvalho, LPS, Silva dos Santos, M, Pérez-Lorente, AI, Molina-Santiago, C, Romero, D, Franke, R, Brönstrup, M, Vera Ponce de León, A, Pope, PB, La Rosa, SL
, La Barbera, G, Roager, HM, Laursen, MF, Hammerle, F, Siewert, B, Peintner, U, Licona-Cassani, C, Rodriguez-Orduña, L, Rampler, E, Hildebrand, F, Koellensperger, G, Schoeny, H, Hohenwallner, K, Panzenboeck, L, Gregor, R, O’Neill, EC, Roxborough, ET, Odoi, J, Bale, NJ, Ding, S, Sinninghe Damsté, JS, Guan, XL, Cui, JJ, Ju, KS, Silva, DB, Silva, FMR, da Silva, GF, Koolen, HHF, Grundmann, C, Clement, JA, Mohimani, H, Broders, K, McPhail, KL, Ober-Singleton, SE, Rath, CM, McDonald, D, Knight, R, Wang, M & Dorrestein, PC 2024, '
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data',
Nature Microbiology, bind 9, nr. 2, s. 336-345.
https://doi.org/10.1038/s41564-023-01575-9APA
Zuffa, S., Schmid, R., Bauermeister, A., Paulo, P. W., Caraballo-Rodriguez, A. M., El Abiead, Y., Aron, A. T., Gentry, E. C., Zemlin, J., Meehan, M. J., Avalon, N. E., Cichewicz, R. H., Buzun, E., Terrazas, M. C., Hsu, C. Y., Oles, R., Ayala, A. V., Zhao, J., Chu, H., ... Dorrestein, P. C. (2024).
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology,
9(2), 336-345.
https://doi.org/10.1038/s41564-023-01575-9Vancouver
Zuffa S, Schmid R, Bauermeister A, Paulo PW, Caraballo-Rodriguez AM, El Abiead Y o.a.
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology. 2024;9(2):336-345.
https://doi.org/10.1038/s41564-023-01575-9Author
Zuffa, Simone ; Schmid, Robin ; Bauermeister, Anelize ; Paulo, Paulo Wender ; Caraballo-Rodriguez, Andres M. ; El Abiead, Yasin ; Aron, Allegra T. ; Gentry, Emily C. ; Zemlin, Jasmine ; Meehan, Michael J. ; Avalon, Nicole E. ; Cichewicz, Robert H. ; Buzun, Ekaterina ; Terrazas, Marvic Carrillo ; Hsu, Chia Yun ; Oles, Renee ; Ayala, Adriana Vasquez ; Zhao, Jiaqi ; Chu, Hiutung ; Kuijpers, Mirte C.M. ; Jackrel, Sara L. ; Tugizimana, Fidele ; Nephali, Lerato Pertunia ; Dubery, Ian A. ; Madala, Ntakadzeni Edwin ; Moreira, Eduarda Antunes ; Costa-Lotufo, Leticia Veras ; Lopes, Norberto Peporine ; Rezende-Teixeira, Paula ; Jimenez, Paula C. ; Rimal, Bipin ; Patterson, Andrew D. ; Traxler, Matthew F. ; Pessotti, Rita de Cassia ; Alvarado-Villalobos, Daniel ; Tamayo-Castillo, Giselle ; Chaverri, Priscila ; Escudero-Leyva, Efrain ; Quiros-Guerrero, Luis Manuel ; Bory, Alexandre Jean ; Joubert, Juliette ; Rutz, Adriano ; Wolfender, Jean Luc ; Allard, Pierre Marie ; Sichert, Andreas ; Pontrelli, Sammy ; Pullman, Benjamin S. ; Bandeira, Nuno ; Gerwick, William H. ; Gindro, Katia ; Massana-Codina, Josep ; Wagner, Berenike C. ; Forchhammer, Karl ; Petras, Daniel ; Aiosa, Nicole ; Garg, Neha ; Liebeke, Manuel ; Bourceau, Patric ; Kang, Kyo Bin ; Gadhavi, Henna ; de Carvalho, Luiz Pedro Sorio ; Silva dos Santos, Mariana ; Pérez-Lorente, Alicia Isabel ; Molina-Santiago, Carlos ; Romero, Diego ; Franke, Raimo ; Brönstrup, Mark ; Vera Ponce de León, Arturo ; Pope, Phillip Byron ; La Rosa, Sabina Leanti ; La Barbera, Giorgia ; Roager, Henrik M. ; Laursen, Martin Frederik ; Hammerle, Fabian ; Siewert, Bianka ; Peintner, Ursula ; Licona-Cassani, Cuauhtemoc ; Rodriguez-Orduña, Lorena ; Rampler, Evelyn ; Hildebrand, Felina ; Koellensperger, Gunda ; Schoeny, Harald ; Hohenwallner, Katharina ; Panzenboeck, Lisa ; Gregor, Rachel ; O’Neill, Ellis Charles ; Roxborough, Eve Tallulah ; Odoi, Jane ; Bale, Nicole J. ; Ding, Su ; Sinninghe Damsté, Jaap S. ; Guan, Xue Li ; Cui, Jerry J. ; Ju, Kou San ; Silva, Denise Brentan ; Silva, Fernanda Motta Ribeiro ; da Silva, Gilvan Ferreira ; Koolen, Hector H.F. ; Grundmann, Carlismari ; Clement, Jason A. ; Mohimani, Hosein ; Broders, Kirk ; McPhail, Kerry L. ; Ober-Singleton, Sidnee E. ; Rath, Christopher M. ; McDonald, Daniel ; Knight, Rob ; Wang, Mingxun ; Dorrestein, Pieter C. / microbeMASST : a taxonomically informed mass spectrometry search tool for microbial metabolomics data. I: Nature Microbiology. 2024 ; Bind 9, Nr. 2. s. 336-345.
Bibtex
@article{afeaf7b021b74317b875ea4ce98e2071,
title = "microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data",
abstract = "microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms{\textquoteright} role in ecology and human health.",
author = "Simone Zuffa and Robin Schmid and Anelize Bauermeister and Paulo, {Paulo Wender} and Caraballo-Rodriguez, {Andres M.} and {El Abiead}, Yasin and Aron, {Allegra T.} and Gentry, {Emily C.} and Jasmine Zemlin and Meehan, {Michael J.} and Avalon, {Nicole E.} and Cichewicz, {Robert H.} and Ekaterina Buzun and Terrazas, {Marvic Carrillo} and Hsu, {Chia Yun} and Renee Oles and Ayala, {Adriana Vasquez} and Jiaqi Zhao and Hiutung Chu and Kuijpers, {Mirte C.M.} and Jackrel, {Sara L.} and Fidele Tugizimana and Nephali, {Lerato Pertunia} and Dubery, {Ian A.} and Madala, {Ntakadzeni Edwin} and Moreira, {Eduarda Antunes} and Costa-Lotufo, {Leticia Veras} and Lopes, {Norberto Peporine} and Paula Rezende-Teixeira and Jimenez, {Paula C.} and Bipin Rimal and Patterson, {Andrew D.} and Traxler, {Matthew F.} and Pessotti, {Rita de Cassia} and Daniel Alvarado-Villalobos and Giselle Tamayo-Castillo and Priscila Chaverri and Efrain Escudero-Leyva and Quiros-Guerrero, {Luis Manuel} and Bory, {Alexandre Jean} and Juliette Joubert and Adriano Rutz and Wolfender, {Jean Luc} and Allard, {Pierre Marie} and Andreas Sichert and Sammy Pontrelli and Pullman, {Benjamin S.} and Nuno Bandeira and Gerwick, {William H.} and Katia Gindro and Josep Massana-Codina and Wagner, {Berenike C.} and Karl Forchhammer and Daniel Petras and Nicole Aiosa and Neha Garg and Manuel Liebeke and Patric Bourceau and Kang, {Kyo Bin} and Henna Gadhavi and {de Carvalho}, {Luiz Pedro Sorio} and {Silva dos Santos}, Mariana and P{\'e}rez-Lorente, {Alicia Isabel} and Carlos Molina-Santiago and Diego Romero and Raimo Franke and Mark Br{\"o}nstrup and {Vera Ponce de Le{\'o}n}, Arturo and Pope, {Phillip Byron} and {La Rosa}, {Sabina Leanti} and {La Barbera}, Giorgia and Roager, {Henrik M.} and Laursen, {Martin Frederik} and Fabian Hammerle and Bianka Siewert and Ursula Peintner and Cuauhtemoc Licona-Cassani and Lorena Rodriguez-Ordu{\~n}a and Evelyn Rampler and Felina Hildebrand and Gunda Koellensperger and Harald Schoeny and Katharina Hohenwallner and Lisa Panzenboeck and Rachel Gregor and O{\textquoteright}Neill, {Ellis Charles} and Roxborough, {Eve Tallulah} and Jane Odoi and Bale, {Nicole J.} and Su Ding and {Sinninghe Damst{\'e}}, {Jaap S.} and Guan, {Xue Li} and Cui, {Jerry J.} and Ju, {Kou San} and Silva, {Denise Brentan} and Silva, {Fernanda Motta Ribeiro} and {da Silva}, {Gilvan Ferreira} and Koolen, {Hector H.F.} and Carlismari Grundmann and Clement, {Jason A.} and Hosein Mohimani and Kirk Broders and McPhail, {Kerry L.} and Ober-Singleton, {Sidnee E.} and Rath, {Christopher M.} and Daniel McDonald and Rob Knight and Mingxun Wang and Dorrestein, {Pieter C.}",
note = "Publisher Copyright: {\textcopyright} The Author(s) 2024.",
year = "2024",
doi = "10.1038/s41564-023-01575-9",
language = "English",
volume = "9",
pages = "336--345",
journal = "Nature Microbiology",
issn = "2058-5276",
publisher = "nature publishing group",
number = "2",
}
RIS
TY - JOUR
T1 - microbeMASST
T2 - a taxonomically informed mass spectrometry search tool for microbial metabolomics data
AU - Zuffa, Simone
AU - Schmid, Robin
AU - Bauermeister, Anelize
AU - Paulo, Paulo Wender
AU - Caraballo-Rodriguez, Andres M.
AU - El Abiead, Yasin
AU - Aron, Allegra T.
AU - Gentry, Emily C.
AU - Zemlin, Jasmine
AU - Meehan, Michael J.
AU - Avalon, Nicole E.
AU - Cichewicz, Robert H.
AU - Buzun, Ekaterina
AU - Terrazas, Marvic Carrillo
AU - Hsu, Chia Yun
AU - Oles, Renee
AU - Ayala, Adriana Vasquez
AU - Zhao, Jiaqi
AU - Chu, Hiutung
AU - Kuijpers, Mirte C.M.
AU - Jackrel, Sara L.
AU - Tugizimana, Fidele
AU - Nephali, Lerato Pertunia
AU - Dubery, Ian A.
AU - Madala, Ntakadzeni Edwin
AU - Moreira, Eduarda Antunes
AU - Costa-Lotufo, Leticia Veras
AU - Lopes, Norberto Peporine
AU - Rezende-Teixeira, Paula
AU - Jimenez, Paula C.
AU - Rimal, Bipin
AU - Patterson, Andrew D.
AU - Traxler, Matthew F.
AU - Pessotti, Rita de Cassia
AU - Alvarado-Villalobos, Daniel
AU - Tamayo-Castillo, Giselle
AU - Chaverri, Priscila
AU - Escudero-Leyva, Efrain
AU - Quiros-Guerrero, Luis Manuel
AU - Bory, Alexandre Jean
AU - Joubert, Juliette
AU - Rutz, Adriano
AU - Wolfender, Jean Luc
AU - Allard, Pierre Marie
AU - Sichert, Andreas
AU - Pontrelli, Sammy
AU - Pullman, Benjamin S.
AU - Bandeira, Nuno
AU - Gerwick, William H.
AU - Gindro, Katia
AU - Massana-Codina, Josep
AU - Wagner, Berenike C.
AU - Forchhammer, Karl
AU - Petras, Daniel
AU - Aiosa, Nicole
AU - Garg, Neha
AU - Liebeke, Manuel
AU - Bourceau, Patric
AU - Kang, Kyo Bin
AU - Gadhavi, Henna
AU - de Carvalho, Luiz Pedro Sorio
AU - Silva dos Santos, Mariana
AU - Pérez-Lorente, Alicia Isabel
AU - Molina-Santiago, Carlos
AU - Romero, Diego
AU - Franke, Raimo
AU - Brönstrup, Mark
AU - Vera Ponce de León, Arturo
AU - Pope, Phillip Byron
AU - La Rosa, Sabina Leanti
AU - La Barbera, Giorgia
AU - Roager, Henrik M.
AU - Laursen, Martin Frederik
AU - Hammerle, Fabian
AU - Siewert, Bianka
AU - Peintner, Ursula
AU - Licona-Cassani, Cuauhtemoc
AU - Rodriguez-Orduña, Lorena
AU - Rampler, Evelyn
AU - Hildebrand, Felina
AU - Koellensperger, Gunda
AU - Schoeny, Harald
AU - Hohenwallner, Katharina
AU - Panzenboeck, Lisa
AU - Gregor, Rachel
AU - O’Neill, Ellis Charles
AU - Roxborough, Eve Tallulah
AU - Odoi, Jane
AU - Bale, Nicole J.
AU - Ding, Su
AU - Sinninghe Damsté, Jaap S.
AU - Guan, Xue Li
AU - Cui, Jerry J.
AU - Ju, Kou San
AU - Silva, Denise Brentan
AU - Silva, Fernanda Motta Ribeiro
AU - da Silva, Gilvan Ferreira
AU - Koolen, Hector H.F.
AU - Grundmann, Carlismari
AU - Clement, Jason A.
AU - Mohimani, Hosein
AU - Broders, Kirk
AU - McPhail, Kerry L.
AU - Ober-Singleton, Sidnee E.
AU - Rath, Christopher M.
AU - McDonald, Daniel
AU - Knight, Rob
AU - Wang, Mingxun
AU - Dorrestein, Pieter C.
N1 - Publisher Copyright:
© The Author(s) 2024.
PY - 2024
Y1 - 2024
N2 - microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health.
AB - microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health.
U2 - 10.1038/s41564-023-01575-9
DO - 10.1038/s41564-023-01575-9
M3 - Journal article
C2 - 38316926
AN - SCOPUS:85184262772
VL - 9
SP - 336
EP - 345
JO - Nature Microbiology
JF - Nature Microbiology
SN - 2058-5276
IS - 2
ER -
